第一作者/通讯作者论文：

1. Tianyi Zhang#, Li Yang#, Yunyan Zhai, Li Feng, Tao Zhou*, Xumei Wang*. Population transcriptomic and metabolomic profiling provide novel insights into evolutionary mechanisms of metabolomic diversity between divergent lineages of Rheum palmatum complex. The Plant Journal, 2025, 123: e70417.
2. Xiaohui Gu, Lipan Zhou, Yang Pu, Fan Jiang, Li Yang, Tianyi Zhang, Tao Zhou*. Genome-wide identification and transcriptional expression profiles of the transcription factor WRKY in Gentiana macrophylla. Mol Biol Rep, 2025, 52: 344.
3. Yadi Tang, Lipan Zhou, Tianyi Zhang, Fan Jiang, Yang Pu, Zhengyuan Wang, Jie Liu, Li Feng, Tao Zhou*, Xumei Wang*. Population transcriptome reveals genetic divergence and expression diversity of medicinally effective ingredients-related genes for Rheum palmatum complex derived from the top-geoherb area. Planta 2025, 90:261
4. Li Yang, Jiangyan Sun, Tianyi Zhang, Dake Chu, Tao Zhou*, Xumei Wang*. Comparative transcriptome analysis and HPLC reveal candidate genes associated with synthesis of bioactive constituents in Rheum palmatum complex. Physiol Mol Biol Plants 2024, 30: 1239–1252
5. Tao Zhou, Y. Tang, L. Zhou, et al. Transcriptomic divergence of the Rheum palmatum complex derived from top-geoherb and non-geoherb areas provides the insights into geoherbalism properties of rhubarb. BMC Genomics. 2024, 25: 212.
6. Tao Zhou, Xiaodan Chen, Jordi López-Pujol, Guoqing Bai, Sonia Herrando-Moraira,  Neus Nualart, ... & Guifang Zhao*. Genetically-and environmentally-dependent processes drive interspecific and intraspecific divergence in the Chinese relict endemic genus Dipteronia. Plant Diversity, 2024, 46(5):585-599
7. Tao Zhou, Zhao, Y., Zhou, L. et al. Comparative transcriptome analyses of three Gentiana species provides signals for the molecular footprints of selection effects and the phylogenetic relationships. Mol Genet Genomics 2023, 298: 399–411.
8. Zhai, Y., Zhang, T., Guo, Y. Gao C., Zhou, L., Feng, Li., Zhou, T.^*,Wang, X.^* Phylogenomics, phylogeography and germplasms authentication of the Rheum palmatum complex based on complete chloroplast genomes. J Plant Res 2023:291-304
9. Tao Zhou, Guoqing Bai, Yiheng Hu, et al. De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids. DNA Research 2022, 29(6): dsac034.
10. Tao Zhou, Jiangyan Sun, Yunyan Zhai, et al. Transcriptome profiles of yellowish-white and fuchsia flower in Rheum palmatum complex for discovery of genes related to the difference of flower color. Plant Molecular Biology 2022, 110:187–197
11. Bai, G.^#, Chen, C.^#, Zhao, C.^#, Zhou, T.^#, Li, D., Zhou, T., Li, W., Lu, Y., Cong, X.,  Jia, Y., Li, S., The chromosome-level genome for Toxicodendron vernicifluum provides crucial insights  into Anacardiaceae evolution and urushiol biosynthesis, ISCIENCE 2022, 25(7): 104512.
12. Yang Y, Jia Y, Zhao Y, Wang Y and Zhou T *, Comparative chloroplast genomics provides insights into the genealogical relationships of endangered Tetraena mongolica and the chloroplast genome evolution of related Zygophyllaceae species. Front. Genet. , 2022,  13:1026919.
13. Tao Zhou, T. Zhang, J. Sun, et al. Tissue-specific transcriptome for Rheum tanguticum reveals candidate genes related to the anthraquinones biosynthesis. Physiol Mol Biol Plants 2021, 27: 2487–2501
14. Tao Zhou, Honghong Zhu, Jian Wang, Yucan Xu, Fusheng Xu, Xumei Wang. Complete Chloroplast Genome Sequences Determination of Rheum Species, and Comparative Chloroplast Genomics and Phylogenetics for the Members belong to Rumiceae . Plant Cell Reports, 2020, 39: 811–824.
15. Tao Zhou, Markus Ruhsam, Jian Wang, Honghong Zhu, Wengli Li, Xiao Zhang, Yucan Xu., Fusheng Xu, Xumei Wang*, The complete chloroplast genome of Euphrasia regelii, pseudogenization of ndh genes and the phylogenetic relationships within Orobanchaceae. Frontiers in Genetics, 2019, 10:444.
16. Tao Zhou., Jian Wang, Yun Jia, Wenli Li, Fusheng Xu, Xumei Wang*, Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers. Int. J. Mol. Sci. 2018, 19(7):1962.
17. Tao Zhou, Yuemei Zhao, Guoqing Bai, Xumei Wang*, Characterization of the complete chloroplast genome sequence of Sinowilsonia henryi (Hamamelidaceae), Conservation Genetics Resources, 2018, 10(3): 495-498
18. Tao Zhou, Yanci Yang, Yiheng Hu, Xiao Zhang, Guoqing Bai, Guifang Zhao*, Characterization of the complete chloroplast genome sequence of Lepidium meyenii (Brassicaceae), Conservation Genetics Resources, 2017, 9 (3): 405-408
19. Tao Zhou, Jixiang Zhao, Yanci Yang, Guoqing Bai, Chen Chen, Guifang Zhao*, The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China, Mitochondrial DNA Part A, 2017, 28(1-2): 123-124
20. Tao Zhou, Jixiang Zhao, Chen Chen, Xu Meng, Guifang Zhao*, Characterization of the complete chloroplast genome sequence of Primula veris (Ericales:Primulaceae), Conservation Genetics Resources, 2016, 8(4): 455-458
21. Tao Zhou, Chen Chen, Yue Wei, Yongxia Chang, Guoqing Bai, Zhonghu Li, Nazish Kanwal, Guifang Zhao*, Comparative transcriptome and chloroplast genome analyses of two related Dipteronia species, Frontiers in Plant Science, 2016, 7: 1512
22. Tao Zhou, Zhonghu Li, Guoqing Bai, Li Feng, Chen Chen, Yue Wei, Yongxia Chang, Guifang Zhao*, Transcriptome sequencing and development of genic SSR markers of an endangered Chinese endemic genus Dipteronia Oliver (Aceraceae), Molecules, 2016, 21(3):166

其他论文：

1. Yanci Yang, Tao Zhou, Zengqiang Qian and Guifang Zhao. Phylogenetic relationships in Chinese oaks (Fagaceae, Quercus): Evidence from plastid genome using low-coverage whole genome sequencing. Genomics, 2021, 113(3): 1438-1447.
2. Chen, X.-D.; Zhang, X.; Zhang, H.; Zhou, T.; Zhao, Y.-M.; Yang, J.; Zhao, G.-F. Genetic Differentiation and Demographic History of Three Cerris Oak Species in China Based on Nuclear Microsatellite Makers. Forests 2021, 12, 1164.
3. Xiaodan Chen, Jia Yang, Yufan Guo, Yuemei Zhao, Tao Zhou, Xiao Zhang, ... & Guifang Zhao (2021). Spatial genetic structure and demographic history of the dominant forest oak Quercus fabri hance in subtropical China. Frontiers in plant science, 2278.
4. Chen Chen, Xinwei Shi, Tao Zhou, Weimin Li, Sifeng Li, and Guoqing Bai. Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii. Genome. 2020 64(6): 639-653.
5. Yan-Ci Yang, Ning Wang, Wei Zhang & Tao Zhou^*, The complete chloroplast genome of Clematis fruticosa Turcz. (Ranunculaceae), Mitochondrial DNA Part B, 2020, 5:2,1908-1909.
6. Yuemei Zhao, Tao Zhou, Xiaodan Chen & Xiao Zhang, Characterization of the complete chloroplast genome of Viburnum schensianum (Adoxaceae), Mitochondrial DNAPart B, 2020, 5:2, 1196-1197.
7. Xiao-Dan Chen, Jia Yang, Li Feng, Tao Zhou, Hao Zhang, Hui-Min Li, Guo-Qing Bai, Xu Meng, Zhong-Hu Li, Gui-Fang Zhao^*, Phylogeography and population dynamics of an endemic oak (Quercus fabri Hance) in subtropical China revealed by molecular data and ecological niche modeling, 2020, Tree Genetics & Genomes 16, 2.
8. Yuemei Zhao, Tao Zhou, Xiaodan Chen, Xiao Zhang, Guoqing Bai, GuifangZhao, Characterization of the complete chloroplast genome of Abies chensiensis (Pinaceae), an endemic to China, Mitochondrial DNA Part B, 2019, 4:1, 23-24.
9. Xumei Wang^#, *, Tao Zhou^#, Guoqing Bai, Yuemei Zhao, Complete chloroplast genome sequence of Fagopyrum dibotrys: genome features, comparative analysis and phylogenetic relationships. Scientific reports, 2018, 8: 12379
10. Jing-Jing Sun; Tao Zhou; Rui-Ting Zhang; Yun Jia; Yue-Mei Zhao; Jia Yang; Gui-Fang Zhao^*, Comparative transcriptomes and development of expressed sequence tag-simple sequence repeat markers for two closely related oak species, Journal of Systematics and Evolution, 2019, 57:440-450.
11. Xumei Wang^#, *, Li Feng^#, Tao Zhou^#, Markus Ruhsam*, Lei Huang, Xiaoqi Hou, Xiaojie Sun, Kai Fan, Min Huang, Yun Zhou, Jie Song, Genetic and chemical differentiation characterizes top-geoherb and non-top-geoherb areas in the TCM herb rhubarb, Scientific reports, 2018, 8(1): 9424
12. Xiao Zhang; Tao Zhou; Jia Yang; Jingjing Sun; Miaomiao Ju; Yuemei Zhao; Guifang Zhao, Comparative Analyses of Chloroplast Genomes of Cucurbitaceae Species: Lights into Selective Pressures and Phylogenetic Relationships, Molecules, 2018, 23(9): 2165
13. Xinxin Zhang, MingJin, Nigatu Tadesse, Jun Dang, Tao Zhou, Hui Zhang, Sicen Wang, Zengjun Guo, Yoichiro Ito, Dioscorea zingiberensis C. H. Wright: An overview on its traditional use, phytochemistry, harmacology, clinical applications, quality control, and toxicity, Journal of Ethnopharmacology, 2018, 220: 283-293.
14. Ting Reng, Yanci Yang, Tao Zhou, Zhanlin Liu*, Comparative Plastid Genomes of Primula Species: Sequence Divergence and Phylogenetic Relationships, Int. J. Mol. Sci. 2018, 19(4):1050.
15. Yanci Yang, Juan Zhu, Li Feng, Tao Zhou, Guoqing Bai, Jiao Yang and Guifang Zhao*, Plastid Genome Comparative and Phylogenetic Analyses of the Key Genera in Fagaceae: Highlighting the Effect of Codon Composition Bias in Phylogenetic Inference. Front. Plant Sci. 2018, 9:82.
16. Guoqing Bai, Tao Zhou, Xiao Zhang, Xiaodan Chen, Jia Yang, Zhonghu Li, Guifang Zhao*, Genetic differentiation and population genetic structure of the Chinese endemic Dipteronia Oliv. revealed by cpDNA and AFLP data, Forests, 2017, 8(11): 424
17. Xiao Zhang, Tao Zhou, Nazish Kanwal, Yuemei Zhao, Guoqing Bai, Guifang Zhao*, Completion of eight Gynostemma BL. (Cucurbitaceae) chloroplastgenomes: characterization, comparative analysis, and phylogenetic relationships, Frontiers in Plant Science, 2017.9.12, 8: 1583
18. Shuyun Zeng, Tao Zhou, Kai Han, Yanci Yang, Jianhua Zhao, Zhan-Lin Liu*, The complete chloroplast genome sequences of six Rehmannia species Genes, 2017, 8(3): 103
19. Yanci Yang, Tao Zhou, Dong Duan, Jia Yang, Li Feng, Guifang Zhao*, Comparative analysis of the complete chloroplast genomes of five Quercus species, Frontiers in Plant Science, 2016, 7: 959
20. Yuemei Zhao, Tao Zhou, Zhonghu Li; Guifang Zhao*, Characterization of global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers in two species of Gynostemma (Cucurbitaceae), Molecules, 2015, 20(12): 21214-21231