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2. Ying Ma*, Shiquan Sun*, Xuequn Shang, Evan T. Keller, Mengjie Chen, and Xiang Zhou. Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies. Nature Communications, 11(2020): 1585.
3. Shiquan Sun, Jiaqiang Zhu, Ying Ma, and Xiang Zhou. Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis. Genome Biology, 20(2019): 269.
4. Yue Fan, Lei Li, and Shiquan Sun. Powerful and accurate detection of temporal gene expression patterns from multi-sample multi-stage single-cell transcriptomic data with TDEseq. Genome Biology, 25(2024): 96.
5. Shiquan Sun, Michelle Hood, Laura Scott, Qinke Peng, Sayan Mukherjee, Jenny Tung, and Xiang Zhou. Differential expression analysis for RNAseq using Poisson mixed models. Nucleic Acids Research, 45(2017): e106.
Note: *: co-first author; #: co-corresponding author.